About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20045004_20045250_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20045004 - 20045250
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGAATG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TGCCTCTGAACG
Flanking Amino Acid:
LRVDSAADLHVTFYNCSVGH
Intron Amino Acid Position:
1085

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
66.8
44.6
Major BPS
74.1
0.6
1
69
38.9
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
36.2
-1.6
3.3
49.5
46.5
Minor BPS
55.2
0.03
1.6
58.31
43

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252