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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20047600_20048022_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20047600 - 20048022
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TCTCTCTAAAGA
Flanking Amino Acid:
QYDAPGFWEENEEFSWGPGA
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
73
0.57
1
73.6
28.6
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
49.6
-0
2
63.68
43.1

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252