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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20054160_20055501_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20054160 - 20055501
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATAGATT
Flanking Amino Acid:
ENLFVMTQSMVVKVPILECS
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
79.5
0.66
0.9
76.1
32.6
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
59.7
0.39
2
84.15
36.9

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252