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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20055631_20056033_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20055631 - 20056033
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATCT
5'SS Class:
strong_major
3'SS Sequence:
GACTCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTGCCTGCATA
Flanking Amino Acid:
LGDSRGRLHKVYLGAMGDAH
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.9
32.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.3
0.59
0.9
69.3
36.5
Minor 5ss
46.7
-0.3
2.8
66
45.1
Minor BPS
53.2
0.09
2
71.86
40.7

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252