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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20056217_20059856_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20056217 - 20059856
Intron Length:
3640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCCCAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTGTACTGATTT
Flanking Amino Acid:
VSSNCVQLPADTLYAYPCGS
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
73.5
38.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
56.1
0.14
1
56.6
26.1
Minor 5ss
41
-1
2.8
53.5
43.7
Minor BPS
51.1
0.11
1.9
73.87
43

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252