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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20107106_20107430_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20107106 - 20107430
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACGTG
5'SS Class:
major
3'SS Sequence:
TCTCTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TCTCTCTTCACA
Flanking Amino Acid:
VREAQGKVTEAENVFMIARG
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.5
41.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
84.2
0.77
0.7
79.2
26.3
Minor 5ss
39.3
-1.2
3.5
55
49.2
Minor BPS
61.5
0.36
1.8
72.02
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010242
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021398
20104691 - 20107748
3058
ENSAPLT00000010660
20104691 - 20109382
4692