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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20120334_20120977_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20120334 - 20120977
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTATTTAAACT
Flanking Amino Acid:
PYVREWDKGKELMFGQWSKK
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
77.4
0.62
0.9
73.4
35.9
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
59
0.36
1.7
76.69
40.1

Associated Gene:

Gene:
CCDC174
Ensembl Gene ID:
ENSAPLG00000010346
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010796
20115903 - 20130366
14464