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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20122270_20122512_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20122270 - 20122512
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTACTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTTTCTTTACT
Flanking Amino Acid:
RATLDMLREQTLDQRNKREQ
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
75.1
0.56
0.9
73.6
36.6
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
79.9
1.02
1.5
95.83
29.9

Associated Gene:

Gene:
CCDC174
Ensembl Gene ID:
ENSAPLG00000010346
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010796
20115903 - 20130366
14464