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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20123134_20124559_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20123134 - 20124559
Intron Length:
1426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
LKMDQELQGKRLDPDGNTLL
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.2
73.3
37.9
Major BPS
80
0.75
1
78.6
31
Major PPT
84.7
0.78
0.7
86.7
25.9
Minor 5ss
45.1
-0.5
3.1
64.8
46.5
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
CCDC174
Ensembl Gene ID:
ENSAPLG00000010346
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010796
20115903 - 20130366
14464