About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20126751_20127847_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20126751 - 20127847
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACAAT
5'SS Class:
major
3'SS Sequence:
TTTTCTGTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCTCTAAGA
Flanking Amino Acid:
YEKMAKGDFPDEETEDLYLV
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.4
34.3
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.8
81
31
Minor 5ss
35
-1.7
3.1
47.8
47.9
Minor BPS
57.2
0.22
2
72.69
39.3

Associated Gene:

Gene:
CCDC174
Ensembl Gene ID:
ENSAPLG00000010346
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010796
20115903 - 20130366
14464