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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20128835_20129735_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20128835 - 20129735
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAACA
5'SS Class:
major
3'SS Sequence:
TTGCACTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTTGCAAAATT
Flanking Amino Acid:
IFAKPKPLNKKPSIWSKQNT
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
67.7
37.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
71.2
0.48
0.9
62.2
39.5
Minor 5ss
31.7
-2.1
3.2
40.9
45.1
Minor BPS
47.6
-0.1
2.3
73.42
43.7

Associated Gene:

Gene:
CCDC174
Ensembl Gene ID:
ENSAPLG00000010346
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010796
20115903 - 20130366
14464