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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_201613_204526_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
201613 - 204526
Intron Length:
2914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGGTCTTCATGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
46.2
-0.2
2
64.49
46

Associated Gene:

Gene:
ARHGEF3
Ensembl Gene ID:
ENSAPLG00000003091
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046834
193615 - 317293
123679
ENSAPLT00000042761
201438 - 317844
116407