About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2025225_2026028_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
2025225 - 2026028

Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGG|GTATGTGAT

5'SS Class:
major

3'SS Sequence:
TTTGTGTTCTTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTAGAA

U12 Branch Point Sequence:
CATTTAGAAACA

Flanking Amino Acid:
EIYQKRCEAFGWHAIIVDGH

Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.5
0.7
1
74
36.6

Major BPS
70
0.5
1
67
39.8

Major PPT
78.4
0.64
0.8
77.1
37.1

Minor 5ss
40
-1.1
3.2
48.8
47.3

Minor BPS
42.2
-0.5
2.4
56.71
42.7

Associated Gene:

Gene:
TKT

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

2016534 - 2039226
22693

2022523 - 2039353
16831