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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20299526_20325557_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20299526 - 20325557
Intron Length:
26032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTGACACTAATT
Flanking Amino Acid:
GLKKDLQSDFDDGPYSKGSK
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
67.9
0.4
0.9
57.8
38.5
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
51.5
0.13
2
74.93
41.6

Associated Gene:

Gene:
GRIP2
Ensembl Gene ID:
ENSAPLG00000010553
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011017
20299486 - 20377971
78486