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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20325639_20328200_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20325639 - 20328200
Intron Length:
2562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
CCTGATCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TATTCCTGATCT
Flanking Amino Acid:
ALVSRRQSIPEEFRGVTIVE
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
77.1
0.61
0.9
72.9
37.1
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
68.7
0.67
1.7
86.61
38.7

Associated Gene:

Gene:
GRIP2
Ensembl Gene ID:
ENSAPLG00000010553
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011017
20299486 - 20377971
78486