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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20328337_20329127_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20328337 - 20329127
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTACCAC
U12 Branch Point Sequence:
TGTGTCCTACCA
Flanking Amino Acid:
SNLRPGGLAARSDQLNVGDY
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
47.3
-0.1
1.3
56.2
39
Major PPT
86.6
0.82
0.7
83.2
25.1
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
47.8
-0.1
2
64.11
42.3

Associated Gene:

Gene:
GRIP2
Ensembl Gene ID:
ENSAPLG00000010553
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011017
20299486 - 20377971
78486