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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20332166_20332463_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20332166 - 20332463
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GGTTTGCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGAAA
U12 Branch Point Sequence:
GTTTGCTTACAG
Flanking Amino Acid:
EGNSFGFVLRGGAHEDWHKS
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
71.7
38.6
Major BPS
60.4
0.26
1.4
69.9
35.3
Major PPT
76.8
0.6
1
68.8
42.1
Minor 5ss
29.4
-2.4
2.9
36
40.7
Minor BPS
48.8
-0.2
2.2
61.3
46.1

Associated Gene:

Gene:
GRIP2
Ensembl Gene ID:
ENSAPLG00000010553
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011017
20299486 - 20377971
78486