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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20332540_20333035_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20332540 - 20333035
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
TTGGTTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AAAAAAGTAACT
Flanking Amino Acid:
TYVRPGGPADREGSLKIGDR
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
79.6
0.67
0.9
73.2
37.3
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
42.1
-0.5
2.3
60.19
42.1

Associated Gene:

Gene:
GRIP2
Ensembl Gene ID:
ENSAPLG00000010553
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011017
20299486 - 20377971
78486