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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20339020_20339657_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20339020 - 20339657
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAC
U12 Branch Point Sequence:
GCGTGTATAACT
Flanking Amino Acid:
DKIKPASVVDRCGALHVGDH
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.3
34.3
Major BPS
60.2
0.25
1.3
64
39.8
Major PPT
86.6
0.82
0.8
80.9
31
Minor 5ss
36.2
-1.6
3.4
51.2
45.7
Minor BPS
48
-0
2
65.02
45.6

Associated Gene:

Gene:
GRIP2
Ensembl Gene ID:
ENSAPLG00000010553
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011017
20299486 - 20377971
78486