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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20350770_20351409_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20350770 - 20351409
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTGGCTTTATA
Flanking Amino Acid:
VVLEIEFDVAESVIPSSGTF
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
79
0.65
0.9
72.9
37.5
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
51.4
0.04
2.2
70.72
41.9

Associated Gene:

Gene:
GRIP2
Ensembl Gene ID:
ENSAPLG00000010553
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011017
20299486 - 20377971
78486