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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20360799_20365082_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20360799 - 20365082
Intron Length:
4284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCTCTCTGAACT
Flanking Amino Acid:
SGLTKRGLAERTGAIHVGDR
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
84.9
0.78
0.7
76.8
31.9
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
61.6
0.44
1.5
73.74
43.1

Associated Gene:

Gene:
GRIP2
Ensembl Gene ID:
ENSAPLG00000010553
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011017
20299486 - 20377971
78486