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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20365223_20366446_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20365223 - 20366446
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
ATTCTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTATTCTGATTT
Flanking Amino Acid:
VTLKIKKQTEKPYPKKSGSI
Intron Amino Acid Position:
741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
68.6
39.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.3
0.64
0.9
74.5
39.5
Minor 5ss
35.9
-1.6
2.8
40.5
39.9
Minor BPS
58.2
0.33
1.7
77.32
39.3

Associated Gene:

Gene:
GRIP2
Ensembl Gene ID:
ENSAPLG00000010553
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011017
20299486 - 20377971
78486