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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2036680_2039038_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2036680 - 2039038
Intron Length:
2359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
IITVEDHYHEGGIGEAVCAA
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
66.3
0.41
1
61
37.5
Major PPT
90.2
0.9
0.6
87.8
22.4
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
TKT
Ensembl Gene ID:
ENSAPLG00000015158
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022087
2016534 - 2039226
22693
ENSAPLT00000015815
2022523 - 2039353
16831