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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20369036_20371971_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20369036 - 20371971
Intron Length:
2936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGAGG
5'SS Class:
major
3'SS Sequence:
TACGTTACAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TACGTTACAACA
Flanking Amino Acid:
FSEDDWDKPSRYPNRQNGLE
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.6
45.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
65
0.34
1
59.4
40.3
Minor 5ss
25.1
-2.9
3.1
30.7
42.8
Minor BPS
44
-0.4
1.8
52.8
39.6

Associated Gene:

Gene:
GRIP2
Ensembl Gene ID:
ENSAPLG00000010553
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011017
20299486 - 20377971
78486