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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20372093_20375817_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20372093 - 20375817
Intron Length:
3725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
AGCTGAGTGACT
Flanking Amino Acid:
GQSELLREIEASIMTGSVHN
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.7
35.6
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
86.9
0.83
0.7
81.5
23.5
Minor 5ss
33.9
-1.8
3
43.8
43.9
Minor BPS
40.4
-0.6
2.5
59.05
44.2

Associated Gene:

Gene:
GRIP2
Ensembl Gene ID:
ENSAPLG00000010553
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011017
20299486 - 20377971
78486