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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20393620_20394300_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20393620 - 20394300
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTCTCATCC
Flanking Amino Acid:
WIVITPVLCVGCFIFSLAKY
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.5
0.64
0.8
72.8
30.9
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
56.3
0.18
1.8
69.92
41.8

Associated Gene:

Gene:
SLC6A6
Ensembl Gene ID:
ENSAPLG00000011407
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026606
20391568 - 20438148
46581
ENSAPLT00000025993
20391568 - 20438148
46581
ENSAPLT00000012118
20391568 - 20438148
46581