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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20396617_20398988_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20396617 - 20398988
Intron Length:
2372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTCTTTATT
Flanking Amino Acid:
MLLLLGLDSQFVEVEGQITS
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
72.7
38.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.2
0.77
0.6
82.6
22
Minor 5ss
30.9
-2.2
2.6
34.6
40.9
Minor BPS
69.8
0.71
1.5
84.43
36.6

Associated Gene:

Gene:
SLC6A6
Ensembl Gene ID:
ENSAPLG00000011407
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026606
20391568 - 20438148
46581
ENSAPLT00000025993
20391568 - 20438148
46581
ENSAPLT00000012118
20391568 - 20438148
46581