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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20399102_20403835_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20399102 - 20403835
Intron Length:
4734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGATGG
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
CCTTTCCTATTT
Flanking Amino Acid:
GVNIADVAESGPGLAFIAYP
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
63.6
43.6
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
87.2
0.84
0.6
81.3
30.8
Minor 5ss
36.3
-1.6
3.2
47.6
47.8
Minor BPS
48.7
-0
1.9
67.42
44.2

Associated Gene:

Gene:
SLC6A6
Ensembl Gene ID:
ENSAPLG00000011407
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026606
20391568 - 20438148
46581
ENSAPLT00000025993
20391568 - 20438148
46581
ENSAPLT00000012118
20391568 - 20438148
46581