Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20404178_20406087_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20404178 - 20406087

Intron Length:

1910

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

CTGATAGTAACA

Flanking Amino Acid:

PDMSRLADPQVWIDAGTQIF

Intron Amino Acid Position:

290

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

73.2

37.8

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

87.4

0.84

0.6

86.4

20.3

Minor 5ss

31.5

-2.1

3.3

42.1

44.9

Minor BPS

44.2

-0.4

2.2

56.35

Associated Gene:

Gene:

SLC6A6

Ensembl Gene ID:

ENSAPLG00000011407

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026606

20391568 - 20438148

46581

ENSAPLT00000025993

20391568 - 20438148

46581

ENSAPLT00000012118

20391568 - 20438148

46581