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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20409797_20415024_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20409797 - 20415024
Intron Length:
5228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTGTATACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTGTATACTC
Flanking Amino Acid:
NFTSPVTEFWERNVLSLSSG
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
76.1
0.59
0.9
74.5
39.5
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
46.7
-0.2
2.2
66.44
40

Associated Gene:

Gene:
SLC6A6
Ensembl Gene ID:
ENSAPLG00000011407
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012118
20391568 - 20438148
46581
ENSAPLT00000026606
20391568 - 20438148
46581
ENSAPLT00000025993
20391568 - 20438148
46581