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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20415260_20417489_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20415260 - 20417489
Intron Length:
2230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTACT
5'SS Class:
major
3'SS Sequence:
GTCCCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCATAT
U12 Branch Point Sequence:
CTGTGCATATTT
Flanking Amino Acid:
CWEKICPIFTGIGYASIVIV
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
78.3
35.5
Major BPS
59
0.23
1.2
55
42.7
Major PPT
75.1
0.57
0.8
65.5
36.1
Minor 5ss
34.9
-1.7
2.6
42.8
37.6
Minor BPS
44.7
-0.3
2.2
64.12
46.7

Associated Gene:

Gene:
SLC6A6
Ensembl Gene ID:
ENSAPLG00000011407
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026606
20391568 - 20438148
46581
ENSAPLT00000025993
20391568 - 20438148
46581
ENSAPLT00000012118
20391568 - 20438148
46581