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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20417625_20418304_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20417625 - 20418304
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TGTCTCTCAACA
Flanking Amino Acid:
FPYLCYKNGGGAFLIPYFIF
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
74.8
0.56
0.9
70.1
35.2
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
64.7
0.46
1.5
74
37.1

Associated Gene:

Gene:
SLC6A6
Ensembl Gene ID:
ENSAPLG00000011407
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026606
20391568 - 20438148
46581
ENSAPLT00000025993
20391568 - 20438148
46581
ENSAPLT00000012118
20391568 - 20438148
46581