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Intron Name: Anas_platyrhynchos_platyrhynchos_13_20418545_20438112_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

20418545 - 20438112

Intron Length:

19568

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTAATGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

87.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.1

0.81

0.8

82.5

32.8

Minor 5ss

41.1

-1

3.4

62.8

Minor BPS

0.74

1.1

78.3

32.8

Associated Gene:

Gene:

SLC6A6

Ensembl Gene ID:

ENSAPLG00000011407

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012118

20391568 - 20438148

46581