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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2042374_2043093_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2042374 - 2043093
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTACCTTGAAAA
Flanking Amino Acid:
LETTGIYFGLVYRIRSILHS
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.6
94.3
17.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.2
0.52
0.9
72.8
32.3
Minor 5ss
40.3
-1.1
2.8
54
43.3
Minor BPS
57.5
0.23
1.5
68.42
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021992
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039833
2041215 - 2055103
13889
ENSAPLT00000044456
2041215 - 2055103
13889