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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20431252_20435589_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20431252 - 20435589
Intron Length:
4338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTATCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAG
U12 Branch Point Sequence:
CCTTCTGCAAGG
Flanking Amino Acid:
YIEEGTEVPIAKKELIALGI
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
64.6
0.36
1.5
63.4
44.3
Major PPT
82.5
0.73
0.8
76.8
31.5
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
40.9
-0.8
2.3
46.32
47

Associated Gene:

Gene:
SLC6A6
Ensembl Gene ID:
ENSAPLG00000011407
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025993
20391568 - 20438148
46581