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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2045122_2047496_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2045122 - 2047496
Intron Length:
2375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGACAA
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AATAATAAAACT
Flanking Amino Acid:
RQKTEGQLLGEITRREDSIA
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
63.9
38
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
86.5
0.82
0.7
84.4
30.6
Minor 5ss
24.4
-2.9
3.1
29.1
43.5
Minor BPS
43.6
-0.4
2
62.52
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021992
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039833
2041215 - 2055103
13889