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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2047551_2048446_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2047551 - 2048446
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTCTCTATCC
Flanking Amino Acid:
SHESVDEDPQDSDGEDLGRQ
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.6
0.78
0.8
77.7
35.7
Minor 5ss
32.2
-2
3
40.4
45.3
Minor BPS
54.5
0.12
2
70.61
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021992
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044456
2041215 - 2055103
13889
ENSAPLT00000039833
2041215 - 2055103
13889