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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2050276_2050845_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2050276 - 2050845
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATTTACTCATCT
Flanking Amino Acid:
PILNTEEKNNLLKRCSVLPG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
82.7
0.74
0.8
81
30.3
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
55.8
0.26
2
80.17
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021992
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039833
2041215 - 2055103
13889
ENSAPLT00000044456
2041215 - 2055103
13889