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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2056316_2057233_F

Intron Information:

Intron Rank:
144553
Intron Class:
major
Intron Phase:
Intron Coordinates:
2056316 - 2057233
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAAC
5'SS Class:
major
3'SS Sequence:
ATGCCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
AAATAATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
68.6
36.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
71.5
0.48
0.8
69.7
36
Minor 5ss
32.1
-2
3.2
42.9
44.3
Minor BPS
59.4
0.37
1.8
75.63
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027880
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031063
2055650 - 2060504
4855