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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2057325_2058514_F

Intron Information:

Intron Rank:
144554
Intron Class:
major
Intron Phase:
Intron Coordinates:
2057325 - 2058514
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCC
5'SS Class:
major
3'SS Sequence:
GCTTATTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GTTTGCTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
68.6
37.3
Major BPS
76.8
0.67
1
66
40.9
Major PPT
70.7
0.47
1
63
42.7
Minor 5ss
45.2
-0.5
2.8
60.5
44
Minor BPS
56.7
0.19
2
70.84
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027880
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031063
2055650 - 2060504
4855