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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2058677_2060454_F

Intron Information:

Intron Rank:
144555
Intron Class:
major
Intron Phase:
Intron Coordinates:
2058677 - 2060454
Intron Length:
1778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AGATTCTCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.4
0.53
1
69
41.9
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
51.3
0.12
1.8
68.15
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027880
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031063
2055650 - 2060504
4855