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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20619228_20619551_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20619228 - 20619551
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTGTAAATT
Flanking Amino Acid:
DEETYEEIYKSTKRNIPMLF
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
78.9
34.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
79.6
0.67
0.7
75.6
26.6
Minor 5ss
36.6
-1.5
3.3
50.4
39.9
Minor BPS
55.7
0.26
2.3
82.74
39.5

Associated Gene:

Gene:
LSM3
Ensembl Gene ID:
ENSAPLG00000014499
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015107
20619147 - 20621649
2503