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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20619648_20620642_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20619648 - 20620642
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AAATAATTAACT
Flanking Amino Acid:
NDRELRGRLHAYDQHLNMIL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
83.2
30.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
86.7
0.83
0.7
81
31
Minor 5ss
36.4
-1.5
2.7
41.6
38.3
Minor BPS
59.4
0.37
1.8
75.63
39.8

Associated Gene:

Gene:
LSM3
Ensembl Gene ID:
ENSAPLG00000014499
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015107
20619147 - 20621649
2503