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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20621890_20622279_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20621890 - 20622279
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
CTATCTGATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
GATCCTTTGACA
Flanking Amino Acid:
EKEEEEEEEEDDFEEKKPSI
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
71.2
0.48
1
65.7
39.8
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
66.8
0.52
1.2
69.75
35.8

Associated Gene:

Gene:
XPC
Ensembl Gene ID:
ENSAPLG00000014249
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014863
20621670 - 20632074
10405