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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20623503_20624369_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20623503 - 20624369
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTTTAGTAATG
Flanking Amino Acid:
ESEDEWEDVEELQEPVTDKL
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.1
84.6
33.3
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
85.3
0.79
0.9
76.9
42.1
Minor 5ss
45
-0.5
3
66.7
44.2
Minor BPS
50.2
-0.1
2.3
67.73
40.4

Associated Gene:

Gene:
XPC
Ensembl Gene ID:
ENSAPLG00000014249
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014863
20621670 - 20632074
10405