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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20624494_20624589_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20624494 - 20624589
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TAATCTTATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCTTCTGTAATC
Flanking Amino Acid:
TPEQRKKRERREKRKSEFET
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
75.4
0.57
1
70.3
39.8
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
61.4
0.34
2
73.34
38.7

Associated Gene:

Gene:
XPC
Ensembl Gene ID:
ENSAPLG00000014249
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014863
20621670 - 20632074
10405