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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20626606_20627089_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20626606 - 20627089
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAA
U12 Branch Point Sequence:
TAAAAGTGACCT
Flanking Amino Acid:
PVPLKETTAKGKGSSKRQSL
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
60.1
0.25
1.3
61.7
43.1
Major PPT
88.6
0.87
0.7
84
24.1
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
38.7
-0.7
2.3
57.11
44.4

Associated Gene:

Gene:
XPC
Ensembl Gene ID:
ENSAPLG00000014249
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014863
20621670 - 20632074
10405