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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20628026_20628479_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20628026 - 20628479
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
ACAATTCCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
TTTTGCACAATT
Flanking Amino Acid:
VERDEKEEKEFQVKLQDQPL
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
70
0.45
0.9
62
39.1
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
51.9
0.14
2.2
81.26
40.6

Associated Gene:

Gene:
XPC
Ensembl Gene ID:
ENSAPLG00000014249
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014863
20621670 - 20632074
10405