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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20628641_20628860_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20628641 - 20628860
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CGGACCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AAGTCTCTAATA
Flanking Amino Acid:
GYCRGEAVYSRDCVHTLHSK
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
66.1
0.36
0.9
62
39.7
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
56.1
0.19
1.6
63.51
36.9

Associated Gene:

Gene:
XPC
Ensembl Gene ID:
ENSAPLG00000014249
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014863
20621670 - 20632074
10405