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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20630183_20630508_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20630183 - 20630508
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTACGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTCCTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
CTTCTAGTAGCT
Flanking Amino Acid:
FDFHGGYSHPVTDGYVVCEE
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
67.3
39.7
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
79.5
0.66
0.7
73.1
31.8
Minor 5ss
36
-1.6
3
42.3
44.6
Minor BPS
42.8
-0.4
2.3
65.98
44.6

Associated Gene:

Gene:
XPC
Ensembl Gene ID:
ENSAPLG00000014249
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014863
20621670 - 20632074
10405